Nuclear collective motion with a coherent coupling interaction between quadrupole and octupole modes

A collective Hamiltonian for the rotation-vibration motion of nuclei is considered, in which the axial quadrupole and octupole degrees of freedom are coupled through the centrifugal interaction. The potential of the system depends on the two deformation variables $\beta_2$ and $\beta_3$. The system is considered to oscillate between positive and negative $\beta_3$-values, by rounding an infinite potential core in the $(\beta_2,\beta_3)$-plane with $\beta_2>0$. By assuming a coherent contribution of the quadrupole and octupole oscillation modes in the collective motion, the energy spectrum is derived in an explicit analytic form, providing specific parity shift effects. On this basis several possible ways in the evolution of quadrupole-octupole collectivity are outlined. A particular application of the model to the energy levels and electric transition probabilities in alternating parity spectra of the nuclei $^{150}$Nd, $^{152}$Sm, $^{154}$Gd and $^{156}$Dy is presented.Comment: 25 pages, 13 figures. Accepted in Phys. Rev.

Sequence of Potentials Interpolating between the U(5) and E(5) Symmetries

It is proved that the potentials of the form $\beta^{2n}$ (with $n$ being integer) provide a ``bridge'' between the U(5) symmetry of the Bohr Hamiltonian with a harmonic oscillator potential (occuring for $n=1$) and the E(5) model of Iachello (Bohr Hamiltonian with an infinite well potential, materialized for infinite $n$). Parameter-free (up to overall scale factors) predictions for spectra and B(E2) transition rates are given for the potentials $\beta^4$, $\beta^6$, $\beta^8$, corresponding to $R_4=E(4)/E(2)$ ratios of 2.093, 2.135, 2.157 respectively, compared to the $R_4$ ratios 2.000 of U(5) and 2.199 of E(5). Hints about nuclei showing this behaviour, as well as about potentials ``bridging'' the E(5) symmetry with O(6) are briefly discussed. A note about the appearance of Bessel functions in the framework of E(n) symmetries is given as a by-product.Comment: LaTeX, 17 pages, 9 postscript figure

Upgrading short read animal genome assemblies to chromosome level using comparative genomics and a universal probe set

Most recent initiatives to sequence and assemble new species’ genomes de-novo fail to achieve the ultimate endpoint to produce a series of contigs, each representing one whole chromosome. Even the best-assembled genomes (using contemporary technologies) consist of sub-chromosomal sized scaffolds. To circumvent this problem, we developed a novel approach that combines computational algorithms to merge scaffolds into chromosomal fragments, scaffold verification by PCR and physical mapping to chromosomes. Multi genome-alignment-guided probe selection led to the development of a set of universal avian BAC clones that permit rapid anchoring of multiple scaffold loci to chromosomes on all avian genomes. As proof of principle we assembled genomes of the pigeon (Columbia livia) and peregrine falcon (Falco peregrinus) to chromosome level comparable, in continuity, to avian reference genomes. Both species are of interest for breeding, cultural, food and/or environmental reasons. Pigeon has a typical avian karyotype (2n=80) while falcon (2n=50) is highly rearranged compared to the avian ancestor. Using chromosome breakpoint data, we established that avian interchromosomal breakpoints appear in the regions of low density of conserved non-coding elements (CNEs) and that the chromosomal fission sites are further limited to long CNE “deserts”. This corresponds with fission being the rarest type of rearrangement in avian genome evolution. High-throughput multiple hybridization and rapid capture strategies using the current BAC set provide the basis for assembling numerous avian (and possibly other reptilian) species while the overall strategy for scaffold assembly and mapping provides the basis for an approach that could be applied to any animal genome

Identifying and validating the presence of guanine-quadruplexes (G4) within the blood fluke parasite schistosoma mansoni

Schistosomiasis is a neglected tropical disease that currently affects over 250 million individ-uals worldwide. In the absence of an immunoprophylactic vaccine and the recognition that mono-chemotherapeutic control of schistosomiasis by praziquantel has limitations, new strategies for managing disease burden are urgently needed. A better understanding of schistosome biology could identify previously undocumented areas suitable for the development of novel interventions. Here, for the first time, we detail the presence of G-quadru-plexes (G4) and putative quadruplex forming sequences (PQS) within the Schistosoma mansoni genome. We find that G4 are present in both intragenic and intergenic regions of the seven autosomes as well as the sex-defining allosome pair. Amongst intragenic regions, G4 are particularly enriched in 3´ UTR regions. Gene Ontology (GO) term analysis evi-denced significant G4 enrichment in the wnt signalling pathway (p<0.05) and PQS oligonu-cleotides synthetically derived from wnt-related genes resolve into parallel and anti-parallel G4 motifs as elucidated by circular dichroism (CD) spectroscopy. Finally, utilising a single chain anti-G4 antibody called BG4, we confirm the in situ presence of G4 within both adult female and male worm nuclei. These results collectively suggest that G4-targeted compounds could be tested as novel anthelmintic agents and highlights the possibility that G4-stabilizing molecules could be progressed as candidates for the treatment of schistosomiasis

Deformed Harmonic Oscillators for Metal Clusters: Analytic Properties and Supershells

The analytic properties of Nilsson's Modified Oscillator (MO), which was first introduced in nuclear structure, and of the recently introduced, based on quantum algebraic techniques, 3-dimensional q-deformed harmonic oscillator (3-dim q-HO) with Uq(3) > SOq(3) symmetry, which is known to reproduce correctly in terms of only one parameter the magic numbers of alkali clusters up to 1500 (the expected limit of validity for theories based on the filling of electronic shells), are considered. Exact expressions for the total energy of closed shells are determined and compared among them. Furthermore, the systematics of the appearance of supershells in the spectra of the two oscillators is considered, showing that the 3-dim q-HO correctly predicts the first supershell closure in alkali clusters without use of any extra parameter.Comment: 25 pages LaTeX plus 21 postscript figure

In Vitro and In Vivo Biological Activity of Ruthenium 1,10-Phenanthroline-5,6-dione Arene Complexes

Funding Information: We are grateful to Fundação para a Ciência e a Tecnologia, I.P., through MOSTMICRO-ITQB R&D Unit (UIDB/04612/2020, UIDP/04612/2020) and LS4FUTURE Associated Laboratory (LA/P/0087/2020). The NMR spectrometers at CERMAX are integrated in the national NMR Network and partially supported through project 022162. Oscar A. Lenis-Rojas acknowledge national funds through FCT, POPH-Programa Operacional Potencial Humano, and FSE (European Social Fund) for the CEEC 2017 Initiative. Additionally, this work is financed by national funds from FCT—Fundação para a Ciência e a Tecnologia, I.P., in the scope of the project UIDP/04378/2020 and UIDB/04378/2020 of the Research Unit on Applied Molecular Biosciences—UCIBIO and the project LA/P/0140/2020 of the Associate Laboratory Institute for Health and Bioeconomy—i4HB. Publisher Copyright: © 2022 by the authors.Ruthenium(II) arene complexes exhibit promising chemotherapeutic properties. In this study, the effect of the counter anion in Ru(II) complexes was evaluated by analyzing the biological effect of two Ru(II) p-cymene derivatives with the 1,10-phenanthroline-5,6-dione ligand of general-formula [(η6-arene)Ru(L)Cl][X] X = CF3SO3 (JHOR10) and PF6 (JHOR11). The biological activity of JHOR10 and JHOR11 was examined in the ovarian carcinoma cell line A2780, colorectal carcinoma cell line HCT116, doxorubicin-resistant HCT116 (HCT116-Dox) and in normal human dermal fibroblasts. Both complexes JHOR10 and JHOR11 displayed an antiproliferative effect on A2780 and HCT116 cell lines, and low cytotoxicity in fibroblasts. Interestingly, JHOR11 also showed antiproliferative activity in the HCT116-Dox cancer cell line, while JHOR10 was inactive. Studies in A2780 cells showed that JHOR11 induced the production of reactive oxygen species (ROS) that trigger autophagy and cellular senescence, but no apoptosis induction. Further analysis showed that JHOR11 presented no tumorigenicity, with no effect in the cellular mobility, as evaluated by thye wound scratch assay, and no anti- or pro-angiogenic effect, as evaluated by the ex-ovo chorioallantoic membrane (CAM) assay. Importantly, JHOR11 presented no toxicity in chicken and zebrafish embryos and reduced in vivo the proliferation of HCT116 injected into zebrafish embryos. These results show that these are suitable complexes for clinical applications with improved tumor cell cytotoxicity and low toxicity, and that counter-anion alteration might be a viable clinical strategy for improving chemotherapy outcomes in multidrug-resistant (MDR) tumors.publishersversionpublishe

Remarcs on the shape transition from spherical to deformed gamma unstable nuclei

Energies and transition probabilities for low lying states in $^{134}$Ba and ^{104Ru were calculated within a hybrid model.The ground and the first $2^+$ states are described alternatively as a harmonic and anharmonic vibrator states while the remaining states as states with E(5) symmetry. One concludes that a gradual setting of the 'critical' potential yields a better agreement with the experimental data. Very good agreement with the data is obtained for $^{104}$Ru. Comparing the present results with those of E(5) symmetry, it is conspicuous that the present formalism add corrections to the E(5) formalism by bringing the predictions closer to the experimental data. Analytical relationship between the states with U(5) symmetry and those given by the E(5) description is established.Comment: 21 pages, 3 figures, submitted for publicatio

Extracción, separación y elucidación estructural de dos metabolitos secundarios del alga marina bostrychia calliptera

Este trabajo aborda el estudio de los metabolitos presentes en el alga marina Bostrychia calliptera proveniente de la Bahía de Buenaventura. Un nuevo monoterpeno irregular y un derivado del ácido p-coumárico fueron aislados de la fracción de cloruro de metileno. Las estructuras elucidadas corresponden a 10- hidroxi-(6Z,8E,12Z)-trienohexadecanoato de metilo (1) y (E)- metil-3-(4- hidroxifenil) acrilato (2) empleando Resonancia Magnética Nuclear (RMN) mono y bidimensional

Unified description of magic numbers of metal clusters in terms of the 3-dimensional q-deformed harmonic oscillator

Magic numbers predicted by a 3-dimensional q-deformed harmonic oscillator with Uq(3)>SOq(3) symmetry are compared to experimental data for atomic clusters of alkali metals (Li, Na, K, Rb, Cs), noble metals (Cu, Ag, Au), divalent metals (Zn, Cd), and trivalent metals (Al, In), as well as to theoretical predictions of jellium models, Woods-Saxon and wine bottle potentials, and to the classification scheme using the 3n+l pseudo quantum number. In alkali metal clusters and noble metal clusters the 3-dimensional q-deformed harmonic oscillator correctly predicts all experimentally observed magic numbers up to 1500 (which is the expected limit of validity for theories based on the filling of electronic shells), while in addition it gives satisfactory results for the magic numbers of clusters of divalent metals and trivalent metals, thus indicating that Uq(3), which is a nonlinear extension of the U(3) symmetry of the spherical (3-dimensional isotropic) harmonic oscillator, is a good candidate for being the symmetry of systems of several metal clusters. The Taylor expansions of angular momentum dependent potentials approximately producing the same spectrum as the 3-dimensional q-deformed harmonic oscillator are found to be similar to the Taylor expansions of the symmetrized Woods-Saxon and wine-bottle symmetrized Woods-Saxon potentials, which are known to provide successful fits of the Ekardt potentials.Comment: 23 pages including 7 table